crisprseekplus

DOI: 10.18129/B9.bioc.crisprseekplus    

crisprseekplus

Bioconductor version: Release (3.6)

Bioinformatics platform containing interface to work with offTargetAnalysis and compare2Sequences in the CRISPRseek package, and GUIDEseqAnalysis.

Author: Sophie Wigmore <Sophie.Wigmore at umassmed.edu>, Alper Kucukural <alper.kucukural at umassmed.edu>, Lihua Julie Zhu <julie.zhu at umassmed.edu>, Michael Brodsky <Michael.Brodsky at umassmed.edu>, Manuel Garber <Manuel.Garber at umassmed.edu>

Maintainer: Alper Kucukural <alper.kucukural at umassmed.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("crisprseekplus")

Documentation

HTML	R Script	DEBrowser Vignette
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GeneRegulation, SequenceMatching, Software
Version	1.4.1
In Bioconductor since	BioC 3.4 (R-3.3) (1.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.3.0), shiny, shinyjs, CRISPRseek
Imports	DT, utils, GUIDEseq, GenomicRanges, GenomicFeatures, BiocInstaller, BSgenome, AnnotationDbi, hash
LinkingTo
Suggests	testthat, rmarkdown, knitr, R.rsp
SystemRequirements
Enhances
URL	https://github.com/UMMS-Biocore/crisprseekplus
BugReports	https://github.com/UMMS-Biocore/crisprseekplus/issues/new
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	crisprseekplus_1.4.1.tar.gz
Windows Binary	crisprseekplus_1.4.1.zip
Mac OS X 10.11 (El Capitan)	crisprseekplus_1.4.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/crisprseekplus
Package Short Url	http://bioconductor.org/packages/crisprseekplus/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive