copa

DOI: 10.18129/B9.bioc.copa    

Functions to perform cancer outlier profile analysis.

Bioconductor version: Release (3.6)

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("copa")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("copa")

 

PDF	R Script	copa Overview
PDF		Reference Manual

Details

biocViews	DifferentialExpression, OneChannel, Software, TwoChannel, Visualization
Version	1.46.0
In Bioconductor since	BioC 1.8 (R-2.3) (12 years)
License	Artistic-2.0
Depends	Biobase, methods
Imports
LinkingTo
Suggests	colonCA
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	copa_1.46.0.tar.gz
Windows Binary	copa_1.46.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	copa_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/copa
Package Short Url	http://bioconductor.org/packages/copa/
Package Downloads Report	Download Stats