Bioconductor version: Release (3.6)
A collection of tools for analyzing and visualizing bisulfite sequencing data.
Author: Kasper Daniel Hansen [aut, cre], Peter Hickey [aut]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Citation (from within R,
enter citation("bsseq")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("bsseq")
HTML | R Script | Analyzing WGBS data with bsseq |
HTML | R Script | bsseq User's Guide |
Reference Manual | ||
Text | NEWS |
biocViews | DNAMethylation, Software |
Version | 1.14.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (5.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.3), methods, BiocGenerics, GenomicRanges(>= 1.29.14), SummarizedExperiment(>= 1.7.8), parallel |
Imports | IRanges(>= 2.11.16), GenomeInfoDb, scales, stats, graphics, Biobase, locfit, gtools, data.table, S4Vectors, R.utils (>= 2.0.0), matrixStats (>= 0.50.0), permute, limma, DelayedArray, HDF5Array |
LinkingTo | |
Suggests | RUnit, bsseqData, BiocStyle, rmarkdown, knitr |
SystemRequirements | |
Enhances | |
URL | https://github.com/kasperdanielhansen/bsseq |
BugReports | https://github.com/kasperdanielhansen/bsseq/issues |
Depends On Me | bsseqData, DSS |
Imports Me | MIRA |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | bsseq_1.14.0.tar.gz |
Windows Binary | bsseq_1.14.0.zip |
Mac OS X 10.11 (El Capitan) | bsseq_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/bsseq |
Package Short Url | http://bioconductor.org/packages/bsseq/ |
Package Downloads Report | Download Stats |
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