Bioconductor version: Release (3.6)
Bacon can be used to remove inflation and bias often observed in epigenome- and transcriptome-wide association studies. To this end bacon constructs an empirical null distribution using a Gibbs Sampling algorithm by fitting a three-component normal mixture on z-scores.
Author: Maarten van Iterson [aut, cre], Erik van Zwet [ctb]
Maintainer: Maarten van Iterson <mviterson at gmail.com>
Citation (from within R,
enter citation("bacon")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("bacon")
HTML | R Script | Controlling bias and inflation in association studies using the empirical null distribution |
Reference Manual | ||
Text | NEWS |
biocViews | BatchEffect, Bayesian, GenomeWideAssociation, MethylationArray, MultipleComparison, RNASeq, Regression, Software, StatisticalMethod, Transcriptomics |
Version | 1.6.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (2 years) |
License | GPL (>= 2) |
Depends | R (>= 3.3), methods, stats, ggplot2, graphics, BiocParallel, ellipse |
Imports | |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, testthat, roxygen2 |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | bacon_1.6.0.tar.gz |
Windows Binary | bacon_1.6.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | bacon_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/bacon |
Package Short Url | http://bioconductor.org/packages/bacon/ |
Package Downloads Report | Download Stats |
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