affylmGUI

DOI: 10.18129/B9.bioc.affylmGUI    

GUI for limma package with Affymetrix microarrays

Bioconductor version: Release (3.6)

A Graphical User Interface for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [cre,aut], Ken Simpson [aut], Gordon Smyth [aut], Keith Satterley [ctb], Yifang Hu [ctb]

Maintainer: Yifang Hu <hu at wehi.edu.au>, Gordon Smyth <smyth at wehi.edu.au>, Keith Satterley <keith at wehi.edu.au>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affylmGUI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affylmGUI")

 

PDF	R Script	affylmGUI Vignette
PDF		Extracting affy and limma objects from affylmGUI files
HTML		about.html
HTML		CustMenu.html
HTML		index.html
HTML		windowsFocus.html
PDF		Reference Manual

Details

biocViews	BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version	1.52.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 13 years)
License	GPL (>=2)
Depends
Imports	grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, BiocInstaller, R2HTML, xtable
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://bioinf.wehi.edu.au/affylmGUI/
Depends On Me	oneChannelGUI
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affylmGUI_1.52.0.tar.gz
Windows Binary	affylmGUI_1.52.0.zip
Mac OS X 10.11 (El Capitan)	affylmGUI_1.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affylmGUI
Package Short Url	http://bioconductor.org/packages/affylmGUI/
Package Downloads Report	Download Stats