Bioconductor version: Release (3.6)
This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.
Author: Peter Blattmann, Moritz Heusel and Ruedi Aebersold
Maintainer: Peter Blattmann <blattmann at imsb.biol.ethz.ch>
Citation (from within R,
enter citation("SWATH2stats")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("SWATH2stats")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SWATH2stats")
R Script | SWATH2stats example script | |
R Script | SWATH2stats package Vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, ExperimentalDesign, MassSpectrometry, Preprocessing, Proteomics, Software |
Version | 1.8.1 |
In Bioconductor since | BioC 3.2 (R-3.2) (2.5 years) |
License | GPL-3 |
Depends | R (>= 2.10.0) |
Imports | data.table, reshape2, grid, ggplot2, stats, grDevices, graphics, utils |
LinkingTo | |
Suggests | testthat, aLFQ, knitr, PECA |
SystemRequirements | |
Enhances | imsbInfer, MSstats |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | SWATH2stats_1.8.1.tar.gz |
Windows Binary | SWATH2stats_1.8.1.zip |
Mac OS X 10.11 (El Capitan) | SWATH2stats_1.8.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SWATH2stats |
Package Short Url | http://bioconductor.org/packages/SWATH2stats/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |
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