SNPchip

DOI: 10.18129/B9.bioc.SNPchip    

Visualizations for copy number alterations

Bioconductor version: Release (3.6)

Functions for plotting SNP array data; maintained for historical reasons

Author: Robert Scharpf <rscharpf at jhu.edu> and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at jhu.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SNPchip")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNPchip")

 

PDF	R Script	Plotting Idiograms
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, GeneticVariability, SNP, Software, Visualization
Version	2.24.0
In Bioconductor since	BioC 2.0 (R-2.5) (11 years)
License	LGPL (>= 2)
Depends	R (>= 2.14.0)
Imports	methods, graphics, lattice, grid, foreach, utils, Biobase, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges, SummarizedExperiment, oligoClasses(>= 1.31.1)
LinkingTo
Suggests	crlmm(>= 1.17.14), RUnit
SystemRequirements
Enhances	doSNOW, VanillaICE(>= 1.21.24), RColorBrewer
URL	http://www.biostat.jhsph.edu/~iruczins/software/snpchip.html
Depends On Me	mBPCR
Imports Me	crlmm, phenoTest
Suggests Me	Category, MinimumDistance, oligoClasses, VanillaICE
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SNPchip_2.24.0.tar.gz
Windows Binary	SNPchip_2.24.0.zip
Mac OS X 10.11 (El Capitan)	SNPchip_2.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SNPchip
Package Short Url	http://bioconductor.org/packages/SNPchip/
Package Downloads Report	Download Stats