Bioconductor version: Release (3.6)
This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.
Author: Mo R. Nezami Ranjbar <nranjbar at vt.edu>
Maintainer: Mo R. Nezami Ranjbar <nranjbar at vt.edu>
Citation (from within R,
enter citation("SIMAT")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("SIMAT")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SIMAT")
R Script | SIMAT Usage | |
Reference Manual | ||
Text | NEWS |
biocViews | MassSpectrometry, Metabolomics, Software |
Version | 1.10.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (3 years) |
License | GPL-2 |
Depends | R (>= 3.4.0), Rcpp (>= 0.11.3) |
Imports | mzR, ggplot2, grid, reshape2 |
LinkingTo | |
Suggests | RUnit, BiocGenerics |
SystemRequirements | |
Enhances | |
URL | http://omics.georgetown.edu/SIMAT.html |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | SIMAT_1.10.0.tar.gz |
Windows Binary | SIMAT_1.10.0.zip |
Mac OS X 10.11 (El Capitan) | SIMAT_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SIMAT |
Package Short Url | http://bioconductor.org/packages/SIMAT/ |
Package Downloads Report | Download Stats |
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