RnaSeqSampleSize

DOI: 10.18129/B9.bioc.RnaSeqSampleSize    

RnaSeqSampleSize

Bioconductor version: Release (3.6)

RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data

Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr

Maintainer: Shilin Zhao <zhaoshilin at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RnaSeqSampleSize")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RnaSeqSampleSize")

 

PDF	R Script	RnaSeqSampleSize: Sample size estimation by real data
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, ExperimentalDesign, GeneExpression, RNASeq, Sequencing, Software
Version	1.10.0
In Bioconductor since	BioC 3.1 (R-3.2) (3 years)
License	GPL (>= 2)
Depends	R (>= 2.10), RnaSeqSampleSizeData
Imports	biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2)
LinkingTo	Rcpp
Suggests	BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RnaSeqSampleSize_1.10.0.tar.gz
Windows Binary	RnaSeqSampleSize_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	RnaSeqSampleSize_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RnaSeqSampleSize
Package Short Url	http://bioconductor.org/packages/RnaSeqSampleSize/
Package Downloads Report	Download Stats