Bioconductor version: Release (3.6)
This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).
Author: Martin Morgan [aut, cre], Yubo Cheng [ctb]
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
Citation (from within R,
enter citation("Organism.dplyr")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("Organism.dplyr")
HTML | R Script | Organism.dplyr |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, GenomeAnnotation, Sequencing, Software |
Version | 1.6.2 |
In Bioconductor since | BioC 3.5 (R-3.4) (1 year) |
License | Artistic-2.0 |
Depends | R (>= 3.4), dplyr (>= 0.7.0), AnnotationFilter(>= 1.1.3) |
Imports | RSQLite, S4Vectors, GenomeInfoDb, IRanges, GenomicRanges, GenomicFeatures, AnnotationDbi, methods, tools, utils, BiocFileCache, DBI, dbplyr |
LinkingTo | |
Suggests | org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, BiocStyle, ggplot2 |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | Organism.dplyr_1.6.2.tar.gz |
Windows Binary | Organism.dplyr_1.6.2.zip |
Mac OS X 10.11 (El Capitan) | Organism.dplyr_1.6.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Organism.dplyr |
Package Short Url | http://bioconductor.org/packages/Organism.dplyr/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |
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