NuPoP

DOI: 10.18129/B9.bioc.NuPoP    

An R package for nucleosome positioning prediction

Bioconductor version: Release (3.6)

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.

Author: Ji-Ping Wang <jzwang at northwestern.edu>; Liqun Xi <lxi700 at northwestern.edu>

Maintainer: Ji-Ping Wang<jzwang at northwestern.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NuPoP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NuPoP")

 

PDF	R Script	An R package for Nucleosome positioning prediction
PDF		Reference Manual

Details

biocViews	Classification, Genetics, Software, Visualization
Version	1.28.0
In Bioconductor since	BioC 2.7 (R-2.12) (7.5 years)
License	GPL-2
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	NuPoP_1.28.0.tar.gz
Windows Binary	NuPoP_1.28.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	NuPoP_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/NuPoP
Package Short Url	http://bioconductor.org/packages/NuPoP/
Package Downloads Report	Download Stats