Bioconductor version: Release (3.6)
NanoStringQCPro provides a set of quality metrics that can be used to assess the quality of NanoString mRNA gene expression data -- i.e. to identify outlier probes and outlier samples. It also provides different background subtraction and normalization approaches for this data. It outputs suggestions for flagging samples/probes and an easily sharable html quality control output.
Author: Dorothee Nickles <nickles.dorothee at gene.com>, Thomas Sandmann <sandmann.thomas at gene.com>, Robert Ziman <ziman.robert at gene.com>, Richard Bourgon <bourgon.richard at gene.com>
Maintainer: Robert Ziman <ziman.robert at gene.com>
Citation (from within R,
enter citation("NanoStringQCPro")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("NanoStringQCPro")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoStringQCPro")
vignetteNanoStringQCPro.pdf | ||
Reference Manual | ||
Text | NEWS |
biocViews | Microarray, Normalization, Preprocessing, QualityControl, ReportWriting, Software, mRNAMicroarray |
Version | 1.10.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (3 years) |
License | Artistic-2.0 |
Depends | R (>= 3.2), methods |
Imports | AnnotationDbi(>= 1.26.0), org.Hs.eg.db(>= 2.14.0), Biobase(>= 2.24.0), knitr (>= 1.12), NMF (>= 0.20.5), RColorBrewer (>= 1.0-5), png (>= 0.1-7) |
LinkingTo | |
Suggests | roxygen2 (>= 4.0.1), testthat, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | NanoStringQCPro_1.10.0.tar.gz |
Windows Binary | NanoStringQCPro_1.10.0.zip |
Mac OS X 10.11 (El Capitan) | NanoStringQCPro_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/NanoStringQCPro |
Package Short Url | http://bioconductor.org/packages/NanoStringQCPro/ |
Package Downloads Report | Download Stats |
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