Bioconductor version: Release (3.6)
This Package utilizes a generalized linear model(GLM) of the negative binomial family to characterize count data and allows for multi-factor design. NanoStrongDiff incorporate size factors, calculated from positive controls and housekeeping controls, and background level, obtained from negative controls, in the model framework so that all the normalization information provided by NanoString nCounter Analyzer is fully utilized.
Author: hong wang <hong.wang at uky.edu>, tingting zhai <tingting.zhai at uky.edu>, chi wang <chi.wang at uky.edu>
Maintainer: tingting zhai <tingting.zhai at uky.edu>,hong wang <hong.wang at uky.edu>
Citation (from within R,
enter citation("NanoStringDiff")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("NanoStringDiff")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NanoStringDiff")
R Script | NanoStringDiff Vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, Normalization, Software |
Version | 1.9.2 |
In Bioconductor since | BioC 3.2 (R-3.2) (2.5 years) |
License | GPL |
Depends | Biobase |
Imports | matrixStats, methods, Rcpp |
LinkingTo | Rcpp |
Suggests | testthat, BiocStyle |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | NanoStringDiff_1.9.2.tar.gz |
Windows Binary | NanoStringDiff_1.9.2.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | NanoStringDiff_1.9.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/NanoStringDiff |
Package Short Url | http://bioconductor.org/packages/NanoStringDiff/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |
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