Bioconductor version: Release (3.6)
MetCirc comprises a workflow to interactively explore high-resolution MS/MS metabolomics data: create an MSP object, a format for MS/MS library data, bin m/z values of precursors, calculate similarity between precursors based on the normalised dot product and visualise similarities in a circular layout. Within the interactive framework the user can annotate MS/MS features based on their similarity to (known) related MS/MS features.
Author: Thomas Naake <thomasnaake at googlemail.com> and Emmanuel Gaquerel <emmanuel.gaquerel at cos.uni-heidelberg.de>
Maintainer: Thomas Naake <thomasnaake at googlemail.com>
Citation (from within R,
enter citation("MetCirc")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MetCirc")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetCirc")
R Script | Workflow for Metabolomics | |
Reference Manual | ||
Text | NEWS |
biocViews | MassSpectrometry, Metabolomics, Software, Visualization |
Version | 1.6.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (1.5 years) |
License | GPL-2 |
Depends | R (>= 3.3), amap (>= 0.8), circlize (>= 0.3.9), graphics (>= 3.3), grDevices (>= 3.3), methods (>= 3.3), scales (>= 0.3.0), shiny (>= 1.0.0), stats (>= 3.3) |
Imports | |
LinkingTo | |
Suggests | BiocGenerics, knitr (>= 1.11) |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | MetCirc_1.6.0.tar.gz |
Windows Binary | MetCirc_1.6.0.zip |
Mac OS X 10.11 (El Capitan) | MetCirc_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MetCirc |
Package Short Url | http://bioconductor.org/packages/MetCirc/ |
Package Downloads Report | Download Stats |
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