IdeoViz

DOI: 10.18129/B9.bioc.IdeoViz    

Plots data (continuous/discrete) along chromosomal ideogram

Bioconductor version: Release (3.6)

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

Author: Shraddha Pai <shraddha.pai at utoronto.ca>, Jingliang Ren

Maintainer: Shraddha Pai <shraddha.pai at utoronto.ca>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IdeoViz")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IdeoViz")

 

PDF	R Script	IdeoViz: a package for plotting simple data along ideograms
PDF		Reference Manual
Text		NEWS

Details

biocViews	Microarray, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	GPL-2
Depends	Biobase, IRanges, GenomicRanges, RColorBrewer, rtracklayer, graphics, GenomeInfoDb
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IdeoViz_1.12.0.tar.gz
Windows Binary	IdeoViz_1.12.0.zip
Mac OS X 10.11 (El Capitan)	IdeoViz_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IdeoViz
Package Short Url	http://bioconductor.org/packages/IdeoViz/
Package Downloads Report	Download Stats