Bioconductor version: Release (3.6)
This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.
Author: Andrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic
Maintainer: Andrea Rau <andrea.rau at jouy.inra.fr>
Citation (from within R,
enter citation("HTSFilter")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("HTSFilter")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HTSFilter")
R Script | HTSFilter Vignette | |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, GeneExpression, Normalization, Preprocessing, RNASeq, Sequencing, Software |
Version | 1.18.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4.0) |
Imports | edgeR(>= 3.9.14), DESeq2(>= 1.10.1), DESeq(>= 1.22.1), BiocParallel(>= 1.4.3), Biobase, utils, stats, grDevices, graphics, methods |
LinkingTo | |
Suggests | EDASeq(>= 2.1.4), BiocStyle, testthat |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | coseq |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | HTSFilter_1.18.0.tar.gz |
Windows Binary | HTSFilter_1.18.0.zip |
Mac OS X 10.11 (El Capitan) | HTSFilter_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/HTSFilter |
Package Short Url | http://bioconductor.org/packages/HTSFilter/ |
Package Downloads Report | Download Stats |
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