Bioconductor version: Release (3.6)
This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.
Author: Bioconductor Package Maintainer [aut, cre], Valerie Obenchain [aut], Michael Love [aut], Lori Shepherd [aut], Martin Morgan [aut]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("GenomicFiles")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GenomicFiles")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicFiles")
R Script | Introduction to GenomicFiles | |
Reference Manual | ||
Text | NEWS | |
Video | Reading from a BAM file - Part 2 |
biocViews | Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software |
Version | 1.14.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (4 years) |
License | Artistic-2.0 |
Depends | R (>= 3.1.0), methods, BiocGenerics(>= 0.11.2), GenomicRanges(>= 1.29.6), SummarizedExperiment, BiocParallel(>= 1.1.0), Rsamtools(>= 1.17.29), rtracklayer(>= 1.25.3) |
Imports | GenomicAlignments(>= 1.7.7), IRanges, S4Vectors(>= 0.9.25), VariantAnnotation, GenomeInfoDb |
LinkingTo | |
Suggests | BiocStyle, RUnit, genefilter, deepSNV, RNAseqData.HNRNPC.bam.chr14, Biostrings, Homo.sapiens |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | erma |
Imports Me | contiBAIT, derfinder, gQTLBase, gQTLstats, ldblock, QuasR, Rqc, yriMulti |
Suggests Me | MultiAssayExperiment |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | GenomicFiles_1.14.0.tar.gz |
Windows Binary | GenomicFiles_1.14.0.zip |
Mac OS X 10.11 (El Capitan) | GenomicFiles_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GenomicFiles |
Package Short Url | http://bioconductor.org/packages/GenomicFiles/ |
Package Downloads Report | Download Stats |
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