GeneExpressionSignature

DOI: 10.18129/B9.bioc.GeneExpressionSignature    

Gene Expression Signature based Similarity Metric

Bioconductor version: Release (3.6)

This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.

Author: Yang Cao

Maintainer: Yang Cao <yiluheihei at gmail.com>, Fei Li <pittacus at gmail.com>,Lu Han <hanl8910 at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneExpressionSignature")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneExpressionSignature")

 

PDF	R Script	GeneExpressionSignature
PDF		Reference Manual

Details

biocViews	GeneExpression, Software
Version	1.24.0
In Bioconductor since	BioC 2.9 (R-2.14) (6.5 years)
License	GPL-2
Depends	R (>= 2.13), Biobase, PGSEA
Imports
LinkingTo
Suggests	apcluster, GEOquery
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneExpressionSignature_1.24.0.tar.gz
Windows Binary	GeneExpressionSignature_1.24.0.zip
Mac OS X 10.11 (El Capitan)	GeneExpressionSignature_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneExpressionSignature
Package Short Url	http://bioconductor.org/packages/GeneExpressionSignature/
Package Downloads Report	Download Stats