Bioconductor version: Release (3.6)
FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.
Author: Sofie Van Gassen, Britt Callebaut and Yvan Saeys
Maintainer: Sofie Van Gassen <sofie.vangassen at ugent.be>
Citation (from within R,
enter citation("FlowSOM")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("FlowSOM")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FlowSOM")
R Script | FlowSOM | |
Reference Manual | ||
Text | NEWS |
biocViews | CellBasedAssays, CellBiology, Clustering, FlowCytometry, Software, Visualization |
Version | 1.10.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (3 years) |
License | GPL (>= 2) |
Depends | R (>= 3.2), igraph |
Imports | flowCore, ConsensusClusterPlus, BiocGenerics, tsne, XML, flowUtils |
LinkingTo | |
Suggests | BiocStyle |
SystemRequirements | |
Enhances | |
URL | http://www.r-project.org http://dambi.ugent.be |
Depends On Me | |
Imports Me | cytofkit, MetaCyto |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | FlowSOM_1.10.0.tar.gz |
Windows Binary | FlowSOM_1.10.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | FlowSOM_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/FlowSOM |
Package Short Url | http://bioconductor.org/packages/FlowSOM/ |
Package Downloads Report | Download Stats |
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