Bioconductor version: Release (3.6)
EpiDISH is a R package to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.
Author: Andrew E. Teschendorff <a.teschendorff at ucl.ac.uk>, Shijie C. Zheng<shijieczheng at gmail.com>
Maintainer: Shijie Charles Zheng<shijieczheng at gmail.com>
Citation (from within R,
enter citation("EpiDISH")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("EpiDISH")
HTML | R Script | Epigenetic Dissection of Intra-Sample-Heterogeneity - R package |
Reference Manual | ||
Text | NEWS |
biocViews | DNAMethylation, DifferentialMethylation, Epigenetics, MethylationArray, Software |
Version | 1.0.0 |
License | GPL-2 |
Depends | R (>= 3.4) |
Imports | MASS, e1071, quadprog |
LinkingTo | |
Suggests | roxygen2, GEOquery, BiocStyle, knitr, rmarkdown, Biobase, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/sjczheng/EpiDISH |
BugReports | https://github.com/sjczheng/EpiDISH/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | EpiDISH_1.0.0.tar.gz |
Windows Binary | EpiDISH_1.0.0.zip |
Mac OS X 10.11 (El Capitan) | EpiDISH_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/EpiDISH |
Package Short Url | http://bioconductor.org/packages/EpiDISH/ |
Package Downloads Report | Download Stats |
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