DEGseq

DOI: 10.18129/B9.bioc.DEGseq    

Identify Differentially Expressed Genes from RNA-seq data

Bioconductor version: Release (3.6)

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglk at hsc.pku.edu.cn> and Xi Wang <wang-xi05 at mails.tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglk at hsc.pku.edu.cn>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DEGseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEGseq")

 

PDF	R Script	DEGseq
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, Preprocessing, RNASeq, Software
Version	1.32.0
In Bioconductor since	BioC 2.5 (R-2.10) (8.5 years)
License	LGPL (>=2)
Depends	R (>= 2.8.0), qvalue, samr, methods
Imports	graphics, grDevices, methods, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DEGseq_1.32.0.tar.gz
Windows Binary	DEGseq_1.32.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	DEGseq_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DEGseq
Package Short Url	http://bioconductor.org/packages/DEGseq/
Package Downloads Report	Download Stats