CytoML

DOI: 10.18129/B9.bioc.CytoML    

GatingML interface for openCyto

Bioconductor version: Release (3.6)

This package is designed to use GatingML2.0 as the standard format to exchange the gated data with other software platform.

Author: Mike Jiang

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("CytoML")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CytoML")

Documentation

HTML R Script How to export a GatingSet to GatingML
HTML R Script How to parse gatingML into a GatingSet
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, FlowCytometry, Software
Version 1.4.1
In Bioconductor since BioC 3.4 (R-3.3) (1.5 years)
License Artistic-2.0
Depends
Imports flowCore(>= 1.43.10), flowWorkspace(>= 3.25.16), openCyto(>= 1.11.3), XML, data.table, flowUtils(>= 1.35.7), jsonlite, RBGL, ncdfFlow, Rgraphviz, Biobase, methods, graph, graphics, utils, base64enc, plyr, ggcyto(>= 1.5.4)
LinkingTo
Suggests testthat, flowWorkspaceData(>= 2.11.1), knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CytoML_1.4.1.tar.gz
Windows Binary CytoML_1.4.1.zip
Mac OS X 10.11 (El Capitan) CytoML_1.4.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/CytoML
Package Short Url http://bioconductor.org/packages/CytoML/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive

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