Bioconductor version: Release (3.6)
This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome
Author: Ernesto Lowy
Maintainer: Ernesto Lowy <ernestolowy at gmail.com>
Citation (from within R,
enter citation("CoverageView")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CoverageView")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CoverageView")
R Script | Easy visualization of the read coverage | |
Reference Manual |
biocViews | ChIPSeq, RNASeq, Sequencing, Software, Technology, Visualization |
Version | 1.16.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (4 years) |
License | Artistic-2.0 |
Depends | R (>= 2.10), methods, Rsamtools(>= 1.19.17), rtracklayer |
Imports | S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, GenomicAlignments, parallel, tools |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | CoverageView_1.16.0.tar.gz |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | CoverageView_1.16.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/CoverageView |
Package Short Url | http://bioconductor.org/packages/CoverageView/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: