Clonality

DOI: 10.18129/B9.bioc.Clonality    

Clonality testing

Bioconductor version: Release (3.6)

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Author: Irina Ostrovnaya

Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>

Citation (from within R, enter citation("Clonality")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Clonality")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Clonality")

 

PDF R Script Clonality
PDF   Reference Manual

Details

biocViews Classification, CopyNumberVariation, Microarray, Software, aCGH
Version 1.26.0
In Bioconductor since BioC 2.8 (R-2.13) (7 years)
License GPL-3
Depends R (>= 2.12.2), DNAcopy
Imports grDevices, graphics, stats, utils
LinkingTo
Suggests gdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Clonality_1.26.0.tar.gz
Windows Binary Clonality_1.26.0.zip
Mac OS X 10.11 (El Capitan) Clonality_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Clonality
Package Short Url http://bioconductor.org/packages/Clonality/
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