BEclear

DOI: 10.18129/B9.bioc.BEclear    

Correct for batch effects in DNA methylation data

Bioconductor version: Release (3.6)

Provides some functions to detect and correct for batch effects in DNA methylation data. The core function "BEclear" is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.

Author: Markus Merl, Ruslan Akulenko

Maintainer: Markus Merl <beclear.package at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BEclear")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEclear")

 

PDF	R Script	BEclear tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	BatchEffect, DNAMethylation, Software
Version	1.10.0
In Bioconductor since	BioC 3.1 (R-3.2) (3 years)
License	GPL-2
Depends	snowfall, Matrix
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BEclear_1.10.0.tar.gz
Windows Binary	BEclear_1.10.0.zip
Mac OS X 10.11 (El Capitan)	BEclear_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BEclear
Package Short Url	http://bioconductor.org/packages/BEclear/
Package Downloads Report	Download Stats