AffyRNADegradation

DOI: 10.18129/B9.bioc.AffyRNADegradation    

Analyze and correct probe positional bias in microarray data due to RNA degradation

Bioconductor version: Release (3.6)

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Author: Mario Fasold

Maintainer: Mario Fasold <fasold at izbi.uni-leipzig.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AffyRNADegradation")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AffyRNADegradation")

 

PDF	R Script	AffyRNADegradation Example
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software
Version	1.24.0
In Bioconductor since	BioC 2.10 (R-2.15) (6 years)
License	GPL-2
Depends	R (>= 2.9.0), methods, affy
Imports
LinkingTo
Suggests	AmpAffyExample
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AffyRNADegradation_1.24.0.tar.gz
Windows Binary	AffyRNADegradation_1.24.0.zip
Mac OS X 10.11 (El Capitan)	AffyRNADegradation_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AffyRNADegradation
Package Short Url	http://bioconductor.org/packages/AffyRNADegradation/
Package Downloads Report	Download Stats