runHeatmap {debrowser}R Documentation

runHeatmap

Description

Creates a heatmap based on the user selected parameters within shiny.

Usage

runHeatmap(data, title = "Title", dend = "both", names = FALSE,
  clustering_method = c("ward.D2", "complete", "single", "average",
  "mcquitty", "median", "centroid"), distance_method = c("euclidean", "cor",
  "maximum", "manhattan", "canberra", "binary", "minkowski"),
  interactive = FALSE)

Arguments

data,

a matrixthat includes expression values

title,

title of the heatmap

dend,

dendogram

names,

a flag to show the rownames

clustering_method

= c('complete', 'ward.D2', 'single', 'average', 'mcquitty', 'median' , 'centroid')

distance_method

= c('cor','euclidean', 'maximum', 'manhattan', 'canberra', 'binary' ,'minkowski')

interactive,

interactive heatmap

Value

heatmap.2 plot

Examples

    x <- runHeatmap(mtcars)


[Package debrowser version 1.6.8 Index]