partnerGeneJunctionSequence {chimeraviz}R Documentation

Get the junction sequence from a PartnerGene object

Description

This getter retrieves the junction sequence from a PartnerGene object

Usage

partnerGeneJunctionSequence(x)

## S4 method for signature 'PartnerGene'
partnerGeneJunctionSequence(x)

Arguments

x

The PartnerGene object you wish to retrieve the junction sequence for.

Value

The upstream fusion partner gene junction sequence.

Examples

# Load data
defuseData <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- importDefuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Get the junction sequence from the upstream fusion partner gene
partnerGeneJunctionSequence(upstreamPartnerGene(fusion))


[Package chimeraviz version 1.4.3 Index]