partnerGeneJunctionSequence {chimeraviz} | R Documentation |
This getter retrieves the junction sequence from a PartnerGene object
partnerGeneJunctionSequence(x) ## S4 method for signature 'PartnerGene' partnerGeneJunctionSequence(x)
x |
The PartnerGene object you wish to retrieve the junction sequence for. |
The upstream fusion partner gene junction sequence.
# Load data defuseData <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- importDefuse(defuseData, "hg19", 1) fusion <- fusions[[1]] # Get the junction sequence from the upstream fusion partner gene partnerGeneJunctionSequence(upstreamPartnerGene(fusion))