PartnerGene-class {chimeraviz} | R Documentation |
The PartnerGene class represents one of the genes in a fusion event.
name
Character containing name of the gene.
ensemblId
Character containing ensembl id for the gene.
chromosome
Character containing chromosome name.
breakpoint
Numeric containing the fusion breakpoint.
strand
Character containing gene strand.
junctionSequence
Biostrings::DNAString containing the sequence right before/after the fusion breakpoint.
transcripts
GenomicRanges::GRangesList containing three GenomicRanges::Granges() objects, one for each "transcript type". The transcript types are: 1) Transcripts where the fusion breakpoint hits an exon boundary, 2) transcripts where the fusion breakpoint is within an exon, 3) transcripts where the fusion breakpoint is within an intron.