importEricscript {chimeraviz} | R Documentation |
A function that imports the results from a EricScript run into a list of Fusion objects.
importEricscript(filename, genomeVersion, limit)
filename |
Filename for the EricScript results file. |
genomeVersion |
Which genome was used in mapping (hg19, hg38, etc.). |
limit |
A limit on how many lines to read. |
A list of Fusion objects.
ericscriptData <- system.file( "extdata", "ericscript_SRR1657556.results.total.tsv", package = "chimeraviz") fusions <- importEricscript(ericscriptData, "hg19", 3) # This should import a list of 3 fusions described in Fusion objects.