anota2seqGetContrasts {anota2seq} | R Documentation |
Retrieve from an Anota2seqDataSet the contrast matrix that is used in the analysis
anota2seqGetContrasts(object) ## S4 method for signature 'Anota2seqDataSet' anota2seqGetContrasts(object)
object |
A Anota2seqDataSet. |
A matrix containing information about the analyzed contrasts to be used for the analysis.
data(anota2seq_data) # Initialize Anota2seqDataSet Anota2seqDataSet <- anota2seqDataSetFromMatrix( dataP = anota2seq_data_P[1:100,], dataT = anota2seq_data_T[1:100,], phenoVec = anota2seq_pheno_vec, dataType = "RNAseq", normalize = TRUE) # Run analysis of differential translation Anota2seqDataSet <- anota2seqAnalyze(Anota2seqDataSet, analysis = "translation") contr <- anota2seqGetContrasts(Anota2seqDataSet) contr # treatment # ctrl -1 # treatment 1