upsetSamples {MultiAssayExperiment} | R Documentation |
UpSetR
Create a generalized Venn Diagram analog for sample membership in multiple
assays, using the upset algorithm in UpSetR
upsetSamples(MultiAssayExperiment, nsets = length(MultiAssayExperiment), nintersects = 24, order.by = "freq", ...)
MultiAssayExperiment |
instance of
|
nsets |
integer number of sets to analyze |
nintersects |
Number of intersections to plot. If set to NA, all intersections will be plotted. |
order.by |
How the intersections in the matrix should be ordered by. Options include frequency (entered as "freq"), degree, or both in any order. |
... |
parameters passed to |
Produces a visualization of set intersections using the UpSet matrix design
Vincent J Carey
data(miniACC) upsetSamples(miniACC)