lohSpec_tileCalc {GenVisR} | R Documentation |
Obtain LOH on an entire chromsomes from samples in a cohort
lohSpec_tileCalc(window_data, normal)
window_data |
object of class data frame with columns "chromosome", "position", "n_vaf", "t_vaf", "sample", "bin", "window_start", "window_stop" |
normal |
integer specifying the subtraction value from tumor VAF |
object of class dataframe containing mean LOH difference calculations and column names "window_start", "window_stop", "chromosome", "position", "n_vaf", "t_vaf", "sample", "loh_diff"