TvTi_buildMain {GenVisR}R Documentation

build transitions/transversions

Description

Given a data frame with columns 'trans_tranv', 'sample', 'Freq', and 'Prop', build a transition/transversion plot

Usage

TvTi_buildMain(x, y = NULL, type = "Proportion", label_x_axis = TRUE,
  x_axis_text_angle = 45, palette = c("#D53E4F", "#FC8D59", "#FEE08B",
  "#E6F598", "#99D594", "#3288BD"), plot_expected = FALSE,
  tvti.layers = NULL, expec.layers = NULL, title_x_axis = TRUE)

Arguments

x

Object of class data frame containing columns 'trans_tranv', 'sample', 'Freq', and 'Prop'

y

Object of class data frame containing columns 'Prop', 'trans_tranv' for display of expected results

type

Object of class character specifying whether to plot the Proportion or Frequency, one of "Prop"

label_x_axis

boolean specifying wheter to label x axis

x_axis_text_angle

Integer specifying the angle to labels on x_axis

palette

Character vector of length 6 specifying colors for trans/tranv type

plot_expected

Boolean specifying if this is the main TvTi plot or a sub plot for expected values

tvti.layers

Additional ggplot2 layers for the main plot

expec.layers

Additional ggplot2 layers for the expected values plot

title_x_axis

boolean specifying whether to display an x axis title

Value

GGplot Object


[Package GenVisR version 1.8.1 Index]