lohSpec_windowPosition {GenVisR} | R Documentation |
Calculate window positions to perform LOH calculation
lohSpec_windowPosition(out, step, window_size)
out |
object of class dataframe with columns 'chromosome', 'position', 'n_vaf', 't_vaf', and 'sample' |
step |
integer with the length of divisions (bp) in chromosomes |
window_size |
integer with the size of the sliding window (bp) to be applied |
list containing window start/stop positions for each chromosome from each sample to perform LOH calculations