cnSpec_qual {GenVisR}R Documentation

Construct CN cohort plot

Description

given a data frame construct a plot to display CN information for a group of samples

Usage

cnSpec_qual(x, y, genome, CNscale)

Arguments

x

object of class data frame containing columns chromosome, start, stop, segmean, sample

y

object of class data frame containing user supplied chromosome locations

genome

character string specifying a user supplied genome

CNscale

Character string specifying if copy number calls supplied are relative (i.e.copy neutral == 0) or absolute (i.e. copy neutral ==2). One of "relative" or "absolute"

Value

character string specifying input passed quality check


[Package GenVisR version 1.8.1 Index]