TvTi_buildMain {GenVisR} | R Documentation |
Given a data frame with columns 'trans_tranv', 'sample', 'Freq', and 'Prop', build a transition/transversion plot
TvTi_buildMain(x, y = NULL, type = "Proportion", label_x_axis = TRUE, x_axis_text_angle = 45, palette = c("#D53E4F", "#FC8D59", "#FEE08B", "#E6F598", "#99D594", "#3288BD"), plot_expected = FALSE, tvti.layers = NULL, expec.layers = NULL, title_x_axis = TRUE)
x |
Object of class data frame containing columns 'trans_tranv', 'sample', 'Freq', and 'Prop' |
y |
Object of class data frame containing columns 'Prop', 'trans_tranv' for display of expected results |
type |
Object of class character specifying whether to plot the Proportion or Frequency, one of "Prop" |
label_x_axis |
boolean specifying wheter to label x axis |
x_axis_text_angle |
Integer specifying the angle to labels on x_axis |
palette |
Character vector of length 6 specifying colors for trans/tranv type |
plot_expected |
Boolean specifying if this is the main TvTi plot or a sub plot for expected values |
tvti.layers |
Additional ggplot2 layers for the main plot |
expec.layers |
Additional ggplot2 layers for the expected values plot |
title_x_axis |
boolean specifying whether to display an x axis title |
GGplot Object