geneViz_formatUTR {GenVisR}R Documentation

format UTR

Description

given a Granges object specifying a region of interest, format into a form recognizable by ggplot2

Usage

geneViz_formatUTR(txdb = NULL, gr = NULL, genome = NULL, reduce = FALSE)

Arguments

txdb

A TxDb object for a genome

gr

A Granges object to format

genome

Object of class BSgenome specifying the genome for GC content calculation

reduce

Boolean specifying whether to collapse isoforms in the Granges object ROI

Value

Object of class data frame


[Package GenVisR version 1.8.1 Index]