lohSpec_slidingWindow {GenVisR} | R Documentation |
Obtain LOH heatmap on entire chromsomes from samples in a cohort
lohSpec_slidingWindow(loh_data, step, window_size, normal)
loh_data |
data frame with columns "chromosome", "position", "n_vaf", "t_vaf", "sample" giving raw vaf calls for germline variants |
step |
integer with the length of divisions (bp) in chromosomes |
window_size |
integer with the size of the sliding window (bp) to be applied |
normal |
integer specifying the normal VAF frequency used in LOH calculations |
object of class dataframe containing LOH data