lohSpec_tileCalc {GenVisR}R Documentation

Calculate loh difference

Description

Obtain LOH on an entire chromsomes from samples in a cohort

Usage

lohSpec_tileCalc(window_data, normal)

Arguments

window_data

object of class data frame with columns "chromosome", "position", "n_vaf", "t_vaf", "sample", "bin", "window_start", "window_stop"

normal

integer specifying the subtraction value from tumor VAF

Value

object of class dataframe containing mean LOH difference calculations and column names "window_start", "window_stop", "chromosome", "position", "n_vaf", "t_vaf", "sample", "loh_diff"


[Package GenVisR version 1.8.1 Index]