TvTi_qual {GenVisR} | R Documentation |
Perform quality check for input to function TvTi
TvTi_qual(x, y = NULL, z = NULL, file_type = "MAF")
x |
Object of class data frame containing columns 'sample', reference', 'variant' for 'MGI' file or 'Tumor_Sample_Barcode', 'Reference_Allele', 'Tumor_Seq_Allele1', 'Tumor_Seq_Allele2' for 'MAF' file |
y |
Object of class data frame containing columns "Prop", "trans_tranv" |
z |
Object of class data frame containing columns "sample", "variable", "value" denoting clinical information |
file_type |
Character string spedifying th input file type expected |
a data frame, or list of data frames passing quality checks