significants {DEGreport}R Documentation

Method to get the significant genes

Description

Function to get the features that are significant according to some thresholds from a DEGSet, DESeq2::DESeqResults and edgeR::topTags.

Usage

significants(object, ...)

## S4 method for signature 'DEGSet'
significants(object, padj = 0.05, fc = 0, ...)

## S4 method for signature 'DESeqResults'
significants(object, padj = 0.05, fc = 0, ...)

## S4 method for signature 'TopTags'
significants(object, padj = 0.05, fc = 0, ...)

Arguments

object

DEGSet

...

Passed to deg. Default: value = NULL. Value can be 'raw', 'shrunken'.

padj

Cutoff for the FDR column.

fc

Cutoff for the log2FC column.

Author(s)

Lorena Pantano


[Package DEGreport version 1.14.1 Index]