Detecting hidden batch factors through data adaptive adjustment for biological effects


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Documentation for package ‘DASC’ version 1.0.0

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DASC-package Detecting hidden batch factors through data adaptive shrinkage and clustering (DASC)
adj2vector Transform the adjacency matrix to a vector
DASC Detecting hidden batch factors through data adaptive shrinkage and clustering (DASC)
get_father Representing node in this subtype
Ini_SemiNMF Initialization of the semi-NMF
Loss_Fro Get the error of Semi-NMF using frobenius norm
merge Combine two trees into one
Semi_NMF Main function of semi-NMF
Sptree Get Spanning tree from adjacency matrix
stanfordData Stanford RNA-Seq dataset
trans_ADJ Outputs Adjacency matrix from the factor vector
trans_Laplace Get Laplace matrix from factor vector
update_G Update G in Semi-NMF