To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("qpgraph")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
Estimate gene and eQTL networks from high-throughput expression and genotyping assays.
Author: Robert Castelo [aut, cre], Alberto Roverato [aut]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R,
enter citation("qpgraph")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("qpgraph")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qpgraph")
BasicUsersGuide.pdf | ||
R Script | Estimate eQTL networks using qpgraph | |
R Script | Reverse-engineer transcriptional regulatory networks using qpgraph | |
R Script | Simulating molecular regulatory networks using qpgraph | |
Reference Manual | ||
Text | NEWS |
biocViews | GeneExpression, GeneRegulation, GeneticVariability, Genetics, GraphAndNetwork, Microarray, NetworkInference, Pathways, SNP, Software, Transcription |
Version | 2.10.2 |
In Bioconductor since | BioC 2.4 (R-2.9) (8.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.0.0) |
Imports | methods, parallel, Matrix (>= 1.0), grid, annotate, graph(>= 1.45.1), Biobase, S4Vectors, BiocParallel, AnnotationDbi, IRanges, GenomeInfoDb, GenomicRanges, GenomicFeatures, mvtnorm, qtl, Rgraphviz |
LinkingTo | |
Suggests | RUnit, BiocGenerics, BiocStyle, genefilter, org.EcK12.eg.db, rlecuyer, snow, Category, GOstats |
SystemRequirements | |
Enhances | |
URL | http://functionalgenomics.upf.edu/qpgraph |
Depends On Me | |
Imports Me | clipper, ToPASeq |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | qpgraph_2.10.2.tar.gz |
Windows Binary | qpgraph_2.10.2.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | qpgraph_2.10.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/qpgraph |
Package Short Url | http://bioconductor.org/packages/qpgraph/ |
Package Downloads Report | Download Stats |
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