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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathVar")
In most cases, you don't need to download the package archive at all.
pathVar
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Methods to Find Pathways with Significantly Different Variability
Bioconductor version: Release (3.5)
This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.
Author: Laurence de Torrente, Samuel Zimmerman, Jessica Mar
Maintainer: Samuel Zimmerman <sezimmer at einstein.yu.edu>
Citation (from within R,
enter citation("pathVar")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathVar")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathVar")
| R Script | Tutorial on How to Use the Functions in the \texttt{PathVar} Package | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneSetEnrichment, GeneticVariability, Pathways, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (2 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 3.3.0), methods, ggplot2, gridExtra |
| Imports | EMT, mclust, Matching, data.table, stats, grDevices, graphics, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pathVar_1.6.0.tar.gz |
| Windows Binary | pathVar_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | pathVar_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pathVar |
| Package Short Url | http://bioconductor.org/packages/pathVar/ |
| Package Downloads Report | Download Stats |
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