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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mosaics")
In most cases, you don't need to download the package archive at all.
mosaics
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This package is for version 3.5 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see jmosaic.
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Bioconductor version: Release (3.5)
This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.
Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles
Maintainer: Dongjun Chung <dongjun.chung at gmail.com>
Citation (from within R,
enter citation("mosaics")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mosaics")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mosaics")
| R Script | MOSAiCS | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription |
| Version | 2.14.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (6.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.0.0), methods, graphics, Rcpp |
| Imports | MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors |
| LinkingTo | Rcpp |
| Suggests | mosaicsExample |
| SystemRequirements | Perl |
| Enhances | parallel |
| URL | http://groups.google.com/group/mosaics_user_group |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mosaics_2.14.0.tar.gz |
| Windows Binary | mosaics_2.14.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | mosaics_2.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mosaics |
| Package Short Url | http://bioconductor.org/packages/mosaics/ |
| Package Downloads Report | Download Stats |
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