To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epiNEM")
In most cases, you don't need to download the package archive at all.
epiNEM
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epiNEM
Bioconductor version: Release (3.5)
epiNEM is an extension of the original Nested Effects Models (NEM). EpiNEM is able to take into account double knockouts and infer more complex network signalling pathways.
Author: Madeline Diekmann & Martin Pirkl
Maintainer: Martin Pirkl <martin.pirkl at bsse.ethz.ch>
Citation (from within R,
enter citation("epiNEM")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epiNEM")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epiNEM")
| R Script | epiNEM | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Network, NetworkInference, Pathways, Software, SystemsBiology |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.4) |
| Imports | BoolNet, e1071, gtools, stats, igraph, nem, utils, lattice, latticeExtra, RColorBrewer, pcalg, minet, grDevices, graph |
| LinkingTo | |
| Suggests | knitr, RUnit, BiocGenerics, STRINGdb, devtools, rmarkdown, GOSemSim, AnnotationHub, org.Sc.sgd.db |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | epiNEM_1.0.1.tar.gz |
| Windows Binary | epiNEM_1.0.1.zip |
| Mac OS X 10.11 (El Capitan) | epiNEM_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/epiNEM |
| Package Short Url | http://bioconductor.org/packages/epiNEM/ |
| Package Downloads Report | Download Stats |
Documentation »
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