To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

In most cases, you don't need to download the package archive at all.

ensemblVEP

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: Release (3.5)

Query the Ensembl Variant Effect Predictor via the perl API.

Author: Valerie Obenchain and Lori Shepherd

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("ensemblVEP")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ensemblVEP")

biocViews	Annotation, SNP, Software, VariantAnnotation
Version	1.20.1
In Bioconductor since	BioC 2.12 (R-3.0) (4.5 years)
License	Artistic-2.0
Depends	methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports	S4Vectors(>= 0.9.25), Biostrings, SummarizedExperiment, GenomeInfoDb, stats
LinkingTo
Suggests	RUnit
SystemRequirements	Ensembl VEP (API version 88) and the Perl modules DBI and DBD::mysql must be installed. See the package README and Ensembl installation instructions: http://www.ensembl.org/info/docs/tools/vep/script/vep_download.html#installer
Enhances
URL
Depends On Me
Imports Me	TVTB
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Source Package	ensemblVEP_1.20.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)	ensemblVEP_1.20.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ensemblVEP
Package Short Url	http://bioconductor.org/packages/ensemblVEP/
Package Downloads Report	Download Stats

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