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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("consensusSeekeR")
In most cases, you don't need to download the package archive at all.
consensusSeekeR
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Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
Bioconductor version: Release (3.5)
This package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region.
Author: Astrid Deschenes [cre, aut], Fabien Claude Lamaze [ctb], Pascal Belleau [aut], Arnaud Droit [aut]
Maintainer: Astrid Deschenes <adeschen at hotmail.com>
Citation (from within R,
enter citation("consensusSeekeR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("consensusSeekeR")
Documentation
| HTML | R Script | Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | BiologicalQuestion, ChIPSeq, Coverage, Genetics, MultipleComparison, PeakDetection, Sequencing, Software, Transcription |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), BiocGenerics, IRanges, GenomicRanges, BiocParallel |
| Imports | GenomeInfoDb, rtracklayer, stringr, S4Vectors, methods |
| LinkingTo | |
| Suggests | BiocStyle, ggplot2, knitr, rmarkdown, RUnit |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/ArnaudDroitLab/consensusSeekeR |
| BugReports | https://github.com/ArnaudDroitLab/consensusSeekeR/issues |
| Depends On Me | |
| Imports Me | RJMCMCNucleosomes |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | consensusSeekeR_1.4.0.tar.gz |
| Windows Binary | consensusSeekeR_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | consensusSeekeR_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/consensusSeekeR |
| Package Short Url | http://bioconductor.org/packages/consensusSeekeR/ |
| Package Downloads Report | Download Stats |
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