To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ballgown")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.
Author: Jack Fu [aut], Alyssa C. Frazee [aut, cre], Leonardo Collado-Torres [aut], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]
Maintainer: Jack Fu <jmfu at jhsph.edu>
Citation (from within R,
enter citation("ballgown")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ballgown")
HTML | R Script | Flexible isoform-level differential expression analysis with Ballgown |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, Preprocessing, RNASeq, Software, StatisticalMethod |
Version | 2.8.4 |
In Bioconductor since | BioC 3.0 (R-3.1) (3 years) |
License | Artistic-2.0 |
Depends | R (>= 3.1.1), methods |
Imports | GenomicRanges(>= 1.17.25), IRanges(>= 1.99.22), S4Vectors(>= 0.9.39), RColorBrewer, splines, sva, limma, rtracklayer(>= 1.29.25), Biobase(>= 2.25.0), GenomeInfoDb |
LinkingTo | |
Suggests | testthat, knitr |
SystemRequirements | |
Enhances | |
URL | |
BugReports | https://github.com/alyssafrazee/ballgown/issues |
Depends On Me | |
Imports Me | |
Suggests Me | polyester, variancePartition |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | ballgown_2.8.4.tar.gz |
Windows Binary | ballgown_2.8.4.zip |
Mac OS X 10.11 (El Capitan) | ballgown_2.8.4.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ballgown |
Package Short Url | http://bioconductor.org/packages/ballgown/ |
Package Downloads Report | Download Stats |
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