To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GenomicScores")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.
Author: Robert Castelo [aut, cre], Pau Puigdevall [ctb]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R,
enter citation("GenomicScores")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GenomicScores")
HTML | R Script | An introduction to the GenomicScores package |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, Coverage, Genetics, Infrastructure, Sequencing, Software |
Version | 1.0.2 |
In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4), S4Vectors(>= 0.7.21), GenomicRanges, methods, BiocGenerics(>= 0.13.8) |
Imports | utils, XML, IRanges(>= 2.3.23), BSgenome, GenomeInfoDb, AnnotationHub |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19, phastCons100way.UCSC.hg19, VariantAnnotation, TxDb.Hsapiens.UCSC.hg19.knownGene |
SystemRequirements | |
Enhances | |
URL | https://github.com/rcastelo/GenomicScores |
BugReports | https://github.com/rcastelo/GenomicScores/issues |
Depends On Me | fitCons.UCSC.hg19, phastCons100way.UCSC.hg19, phastCons100way.UCSC.hg38, phastCons7way.UCSC.hg38 |
Imports Me | ATACseqQC, RareVariantVis, VariantFiltering |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | GenomicScores_1.0.2.tar.gz |
Windows Binary | GenomicScores_1.0.2.zip |
Mac OS X 10.11 (El Capitan) | GenomicScores_1.0.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GenomicScores |
Package Short Url | http://bioconductor.org/packages/GenomicScores/ |
Package Downloads Report | Download Stats |
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