To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ELMER")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.
Author: Lijing Yao [aut], Ben Berman [aut], Peggy Farnham [aut], Hui Shen [ctb], Peter Laird [ctb], Simon Coetzee [cre, ctb]
Maintainer: Simon Coetzee <Simon.Coetzee at cshs.org>
Citation (from within R,
enter citation("ELMER")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ELMER")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ELMER")
R Script | ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Methylomes | |
Reference Manual |
biocViews | DNAMethylation, GeneExpression, GeneRegulation, MotifAnnotation, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (2 years) |
License | GPL-3 |
Depends | R (>= 3.2.0), IlluminaHumanMethylation450kanno.ilmn12.hg19, Homo.sapiens, ELMER.data |
Imports | methods, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, ggplot2, reshape, grid, gridExtra, minfi, GenomicFeatures |
LinkingTo | |
Suggests | parallel, snow, BiocStyle, knitr, R.utils, downloader |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | TCGAbiolinksGUI |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | ELMER_1.6.0.tar.gz |
Windows Binary | ELMER_1.6.0.zip |
Mac OS X 10.11 (El Capitan) | ELMER_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ELMER |
Package Short Url | http://bioconductor.org/packages/ELMER/ |
Package Downloads Report | Download Stats |
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