- Home
- Bioconductor 3.4
- Experiment Packages
- pasilla
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pasilla")
In most cases, you don't need to download the package archive at all.
pasilla
|
|
|
|
|
|
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.
Bioconductor version: Release (3.4)
This package provides per-exon and per-gene read counts computed for selected genes from RNA-seq data that were presented in the article "Conservation of an RNA regulatory map between Drosophila and mammals" by Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR, Genome Res. 2011 Feb;21(2):193-202, Epub 2010 Oct 4, PMID: 20921232. The experiment studied the effect of RNAi knockdown of Pasilla, the Drosophila melanogaster ortholog of mammalian NOVA1 and NOVA2, on the transcriptome. The package vignette describes how the data provided here were derived from the RNA-Seq read sequence data that are provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181.
Author: Wolfgang Huber, Alejandro Reyes
Maintainer: Alejandro Reyes <reyes at embl.de>
Citation (from within R,
enter citation("pasilla")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pasilla")
Documentation
| Reference Manual |
Details
| biocViews | Drosophila_melanogaster_Data, ExperimentData, Genome, RNASeqData |
| Version | 1.2.0 |
| License | LGPL |
| Depends | R (>= 3.3.0) |
| Imports | |
| LinkingTo | |
| Suggests | DEXSeq, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BADER, DESeq, DESeq2, DEXSeq, genefilter, GenomicRanges, IHWpaper, pasillaBamSubset, regionReport, ReportingTools |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pasilla_1.2.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/pasilla/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
