- Home
- Bioconductor 3.4
- Experiment Packages
- lumiBarnes
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("lumiBarnes")
In most cases, you don't need to download the package archive at all.
lumiBarnes
|
|
|
|
|
|
Barnes Benchmark Illumina Tissues Titration Data
Bioconductor version: Release (3.4)
The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).
Author: Pan Du
Maintainer: Pan Du <dupan at northwestern.edu>
Citation (from within R,
enter citation("lumiBarnes")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("lumiBarnes")
Documentation
| Reference Manual |
Details
| biocViews | ChipOnChipData, ExperimentData, MicroarrayData, Tissue |
| Version | 1.14.0 |
| License | LGPL |
| Depends | R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | arrayMvout, lumi |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | lumiBarnes_1.14.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/lumiBarnes/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
