To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("curatedMetagenomicData")

In most cases, you don't need to download the package archive at all.

curatedMetagenomicData

 

   

Curated Metagenomic Data of the Human Microbiome

Bioconductor version: Release (3.4)

The curatedMetagenomicData package provides taxonomic, functional, and gene marker abundance for samples collected from different bodysites.

Author: Levi Waldron <lwaldron.research at gmail.com>, Lucas Schiffer <schiffer.lucas at gmail.com>, Faizan Malik <faizankmalik2012 at yahoo.com>, Edoardo Pasolli <edoardo.pasolli at unitn.it>, Nicola Segata <nicola.segata at unitn.it>, Valerie Obenchain <Valerie.Obenchain at roswellpark.org>, Morgan Martin <martin.morgan at roswellpark.org>

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Citation (from within R, enter citation("curatedMetagenomicData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("curatedMetagenomicData")

Documentation

HTML R Script curatedMetagenomicData
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch
Version 1.0.4
License Artistic-2.0
Depends R (>= 3.3.0), dplyr (>= 0.5.0), phyloseq(>= 1.18.0), Biobase(>= 2.34.0), ExperimentHub(>= 1.0.0), AnnotationHub(>= 2.6.0), magrittr
Imports BiocInstaller, utils, tidyr
LinkingTo
Suggests devtools, roxygen2, testthat, covr, knitr, rmarkdown, BiocCheck, BiocStyle, BiocInstaller, BiocParallel, readr, RISmed
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source curatedMetagenomicData_1.0.4.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/curatedMetagenomicData/
Package Downloads Report Download Stats

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