To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeSousa2013")

In most cases, you don't need to download the package archive at all.

DeSousa2013

 

   

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Bioconductor version: Release (3.4)

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Citation (from within R, enter citation("DeSousa2013")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DeSousa2013")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeSousa2013")

 

PDF R Script Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions
PDF   Reference Manual

Details

biocViews CancerData, ColonCancerData, ExperimentData, MicroarrayData
Version 1.10.0
License Artistic-2.0
Depends R (>= 2.15)
Imports affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DeSousa2013_1.10.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/DeSousa2013/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: