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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("variancePartition")
In most cases, you don't need to download the package archive at all.
variancePartition
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Quantify and interpret divers of variation in multilevel gene expression experiments
Bioconductor version: Release (3.4)
Quantify and interpret multiple sources of biological and technical variation in gene expression experiments. Uses linear mixed model to quantify variation in gene expression attributable to individual, tissue, time point, or technical variables.
Author: Gabriel E. Hoffman
Maintainer: Gabriel E. Hoffman <gabriel.hoffman at mssm.edu>
Citation (from within R,
enter citation("variancePartition")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("variancePartition")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("variancePartition")
| R Script | 1) Tutorial on using variancePartition | |
| R Script | 2) Additional visualizations | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneExpression, RNASeq, Regression, Software |
| Version | 1.4.2 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | GPL (>= 2) |
| Depends | ggplot2, foreach, Biobase, methods |
| Imports | MASS, pbkrtest (>= 0.4-4), iterators, splines, colorRamps, gplots, reshape2, lme4 (>= 1.1-10), doParallel, limma, grDevices, graphics, utils, stats |
| LinkingTo | |
| Suggests | edgeR, dendextend, tximport, tximportData, ballgown, DESeq2, readr, knitr, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | variancePartition_1.4.2.tar.gz |
| Windows Binary | variancePartition_1.4.2.zip |
| Mac OS X 10.9 (Mavericks) | variancePartition_1.4.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/variancePartition/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/variancePartition/ |
| Package Downloads Report | Download Stats |
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