To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sigaR")
In most cases, you don't need to download the package archive at all.
sigaR
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Statistics for Integrative Genomics Analyses in R
Bioconductor version: Release (3.4)
Facilitates the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.
Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>
Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>
Citation (from within R,
enter citation("sigaR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("sigaR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sigaR")
| R Script | sigaR | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (5 years) |
| License | GPL (>= 2) |
| Depends | Biobase, CGHbase, methods, mvtnorm |
| Imports | corpcor (>= 1.6.2), graphics, igraph, limma, marray, MASS, penalized, quadprog, snowfall, stats |
| LinkingTo | |
| Suggests | CGHcall |
| SystemRequirements | |
| Enhances | |
| URL | http://www.few.vu.nl/~wvanwie |
| Depends On Me | HCsnip |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | sigaR_1.22.0.tar.gz |
| Windows Binary | sigaR_1.22.0.zip |
| Mac OS X 10.9 (Mavericks) | sigaR_1.22.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/sigaR/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/sigaR/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
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