To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("shinyMethyl")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.4)
Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.
Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>
Citation (from within R,
enter citation("shinyMethyl")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("shinyMethyl")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shinyMethyl")
R Script | shinyMethyl: interactive visualization of Illumina 450K methylation arrays | |
Reference Manual | ||
Text | NEWS |
biocViews | DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
Version | 1.10.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (2.5 years) |
License | Artistic-2.0 |
Depends | methods, BiocGenerics(>= 0.3.2), shiny (>= 0.13.2), minfi(>= 1.18.2), IlluminaHumanMethylation450kmanifest, matrixStats, R (>= 3.0.0) |
Imports | RColorBrewer |
LinkingTo | |
Suggests | shinyMethylData, minfiData, BiocStyle, RUnit, digest, knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | shinyMethyl_1.10.0.tar.gz |
Windows Binary | shinyMethyl_1.10.0.zip |
Mac OS X 10.9 (Mavericks) | shinyMethyl_1.10.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/shinyMethyl/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/shinyMethyl/ |
Package Downloads Report | Download Stats |
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