To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("rGREAT")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
This package makes GREAT (Genomic Regions Enrichment of Annotations Tool) analysis automatic by constructing a HTTP POST request according to user's input and automatically retrieving results from GREAT web server.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R,
enter citation("rGREAT")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("rGREAT")
HTML | R Script | Analyze with GREAT |
Reference Manual | ||
Text | NEWS |
biocViews | Coverage, GO, GeneSetEnrichment, GenomeAnnotation, Pathways, Sequencing, Software, WholeGenome |
Version | 1.6.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (2 years) |
License | GPL (>= 2) |
Depends | R (>= 3.1.2), GenomicRanges, IRanges, methods |
Imports | rjson, GetoptLong (>= 0.0.9), RCurl, utils |
LinkingTo | |
Suggests | testthat (>= 0.3), knitr, circlize |
SystemRequirements | |
Enhances | |
URL | https://github.com/jokergoo/rGREAT |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | rGREAT_1.6.0.tar.gz |
Windows Binary | rGREAT_1.6.0.zip |
Mac OS X 10.9 (Mavericks) | rGREAT_1.6.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/rGREAT/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/rGREAT/ |
Package Downloads Report | Download Stats |
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